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Quantitative GWAS IGAQ1

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Basic Information

Summary
Accession IGAQ1
Title 테스트 Q GWAS
Description no description
Dataseet IGDS3
Created date 2019-03-06
Last updated 2019-03-06
Registrant Incogwas Admin
Status SUCCESS

Sample Information

Group information
Group No. of samples
default 20 samples
DD 3 samples
XXX 3 samples
Total 20 samples

Analysis Result

Case control gwas result
Result file sample.qassoc
Target trait Average daily gain (ADG)
Minimum MAF 0.01

Download: manhattan plot | result

case control gwas result
CHR SNP BP NMISS BETA SE R2 T P
11 IMF002 38,737,558 20 100.9 43.73 0.2281 2.307 0.03319
1 IMF006 235,349,972 20 105.0 47.86 0.21100000000000002 2.194 0.04163
15 BF008 87,052,613 20 105.0 47.86 0.21100000000000002 2.194 0.04163
1 BF048 59,169,232 20 -56.74 25.88 0.2108 -2.1919999999999997 0.04173
5 IMF013 68,542,388 20 -53.43 25.08 0.2014 -2.131 0.047139999999999994
12 IMF086 59,699,633 20 46.95 24.86 0.1654 1.889 0.07512
1 BF046 55,752,574 20 62.91 33.42 0.1645 1.882 0.07604
1 BF071 59,802,697 20 54.94 29.5 0.1616 1.8619999999999999 0.07896
13 IMF100 22,345,579 20 53.98 29.9 0.1533 1.805 0.08778
13 IMF099 22,241,837 20 43.11 24.51 0.1467 1.7590000000000001 0.09559
4 IMF012 14,754,906 20 -55.9 32.02 0.1448 -1.746 0.09787
3 BF012 23,131,775 20 -54.93 34.05 0.1263 -1.6130000000000002 0.1241
11 BF010 1,739,862 20 67.98 44.22 0.11599999999999999 1.537 0.1416
5 IMF010 74,713,169 20 47.87 31.71 0.1123 1.5090000000000001 0.1486
6 BEL006 74,481,275 20 40.62 27.51 0.10800000000000001 1.476 0.1571
12 IMF079 54,635,126 20 42.4 28.8 0.1075 1.472 0.1582
12 IMF083 54,127,500 20 64.6 47.39 0.09358 1.3630000000000002 0.1896
7 IMF003 95,060,237 20 35.25 26.56 0.08916 1.327 0.201
16 BF051 8,726,614 20 -47.06 35.99 0.08674 -1.308 0.2075
11 BF074 24,099,917 20 32.42 25.41 0.08298 1.276 0.2181
1 BF044 39,496,775 20 35.56 28.11 0.08164 1.265 0.222
9 BF064 23,512,060 20 36.51 31.05 0.07132999999999999 1.176 0.255
1 BF079 106,272,325 20 33.86 31.5 0.06034 1.075 0.2965
14 IMF011 109,816,290 20 -25.23 24.21 0.056920000000000005 -1.042 0.3111
1 BF042 76,435,569 20 35.0 36.03 0.04981 0.9714 0.3442
1 BF073 58,984,446 20 -27.15 28.42 0.04825 -0.9553 0.3521
3 BF013 30,641,913 20 -27.05 28.42 0.04793 -0.9519 0.3538
1 BF049 33,463,384 20 31.71 33.81 0.0466 0.9379 0.3607
6 BEL003 78,170,250 20 22.72 25.39 0.042589999999999996 0.8948 0.3827
8 BF004 56,861,474 20 -26.48 30.15 0.041089999999999995 -0.8782 0.3914
6 BEL001 79,758,709 20 -23.08 27.29 0.03823 -0.8459 0.4087
12 IMF081 53,088,251 20 -22.4 28.65 0.03285 -0.7818 0.4445
12 IMF080 53,079,696 20 -22.4 28.65 0.03285 -0.7818 0.4445
17 BF066 6,013,877 20 -23.52 30.29 0.03242 -0.7766 0.4475
1 BF055 55,705,557 20 19.94 26.8 0.02984 0.7440000000000001 0.4665
13 IMF101 24,782,678 20 21.35 28.69 0.02984 0.7440000000000001 0.4665
1 BF050 64,039,056 20 20.08 27.42 0.028939999999999997 0.7324 0.4733
1 BF053 70,405,415 20 -19.47 27.21 0.02765 -0.7154 0.4835
15 BF062 36,743,539 20 40.69 59.59 0.025240000000000002 0.6827 0.5035
9 BF069 23,416,686 20 19.75 31.88 0.02087 0.6194 0.5434
13 IMF113 132,498,791 20 32.81 53.33 0.0206 0.6153 0.546
15 BF060 39,941,893 20 43.61 71.11 0.02047 0.6133 0.5473
15 BF072 39,990,386 20 43.61 71.11 0.02047 0.6133 0.5473
9 BF070 23,794,494 20 26.46 43.55 0.02009 0.6075 0.5511
14 BF014 132,602,067 20 -19.17 31.81 0.01977 -0.6025 0.5543
6 BEL002 76,312,649 20 17.05 28.85 0.01904 0.5912 0.5618
1 BF045 37,587,582 20 -21.62 36.61 0.019 -0.5905 0.5622
6 BEL010 61,602,482 20 21.53 38.38 0.01719 0.5611 0.5817
1 BF059 55,734,388 20 17.83 31.85 0.01711 0.5598 0.5825
12 IMF075 52,147,581 20 17.06 31.88 0.01565 0.535 0.5992
6 IMF008 38,246,734 20 23.9 44.84 0.01554 0.5331 0.6005
3 BF011 55,094,367 20 -17.11 32.72 0.01496 -0.5228 0.6075
1 BF058 238,879,477 20 13.3 25.76 0.01459 0.5162 0.612
13 IMF001 13,696,766 20 -19.44 38.44 0.013999999999999999 -0.5056 0.6193
1 BF041 66,406,347 20 -24.73 49.43 0.01372 -0.5003 0.6229
6 BEL005 77,161,505 20 -17.59 36.33 0.01286 -0.4842 0.6341
17 BF068 25,429,459 20 16.16 33.44 0.0128 0.4831 0.6348
15 BF080 10,940,052 20 45.53 98.31 0.011770000000000001 0.4631 0.6488
17 BF076 24,230,064 20 -10.99 24.79 0.010790000000000001 -0.4431 0.6629999999999999
6 BEL008 66,630,790 20 11.89 27.06 0.01061 0.4394 0.6656
17 BF078 23,582,219 20 11.33 26.65 0.009944 0.4252 0.6757
17 BF065 23,610,691 20 11.33 26.65 0.009944 0.4252 0.6757
12 IMF082 52,168,157 20 12.94 36.84 0.006809999999999999 0.3513 0.7294
1 BF054 239,175,798 20 8.714 25.68 0.006357 0.3394 0.7383
12 IMF076 52,530,438 20 -9.554 28.71 0.006111999999999999 -0.3327 0.7432
1 BF043 71,240,723 20 10.31 32.13 0.005686 0.3208 0.752
15 IMF007 13,321,028 20 -8.796 29.26 0.004997 -0.3007 0.7671
14 BF007 132,583,785 20 13.69 46.92 0.004707 0.2918 0.7738
2 IMF005 20,052,368 20 -12.58 45.09 0.004307 -0.27899999999999997 0.7834
12 IMF077 52,194,932 20 10.07 36.35 0.004246 0.27699999999999997 0.7849
13 IMF108 107,633,682 20 -16.18 60.24 0.00399 -0.2685 0.7913
12 IMF084 52,951,032 20 9.853 36.89 0.003947 0.2671 0.7924
6 BEL004 78,146,249 20 8.575 32.16 0.003935 0.2667 0.7927
13 IMF098 29,002,221 20 7.865 32.91 0.003163 0.239 0.8138
13 IMF103 54,647,789 20 8.214 36.38 0.0028239999999999997 0.2258 0.8239
16 IMF004 1,079,059 20 4.525 22.12 0.00232 0.2046 0.8402
9 BF006 20,174,513 20 -8.846 45.14 0.002129 -0.196 0.8468
13 BF009 58,793,452 20 8.214 46.99 0.001695 0.1748 0.8632
18 BF015 214,842 20 5.391 32.19 0.0015550000000000002 0.1675 0.8689
13 BF001 52,425,932 20 10.1 60.31 0.0015550000000000002 0.1674 0.8689
1 BF057 248,280,966 20 8.75 53.84 0.001465 0.1625 0.8727
13 IMF107 103,339,848 20 6.757999999999999 45.16 0.001243 0.1497 0.8827
1 BF077 82,246,389 20 5.432 36.54 0.0012259999999999999 0.1486 0.8835
13 IMF114 137,562,773 20 -3.174 22.83 0.001072 -0.139 0.8909999999999999
12 IMF087 59,746,967 20 -3.4930000000000003 29.12 0.0007989 -0.12 0.9058
9 BF063 23,163,791 20 -5.33 45.17 0.0007728 -0.11800000000000001 0.9074
13 BF003 80,436,190 20 4.118 36.95 0.0006894000000000001 0.1114 0.9125
16 BF075 11,170,391 20 4.0 39.34 0.0005740000000000001 0.1017 0.9201
9 BF061 23,626,582 20 -4.467 49.76 0.00044740000000000003 -0.08976 0.9295
9 BF052 19,142,170 20 2.066 26.78 0.0003304 0.07712999999999999 0.9394
11 BF005 36,776,437 20 2.778 43.32 0.00022840000000000002 0.06412000000000001 0.9496
16 BF002 964,201 20 0.3571 36.43 5.339e-06 0.009803000000000001 0.9923
1 BF047 54,824,085 20 -0.2191 27.21 3.603e-06 -0.008053 0.9937
6 BEL007 79,597,816 20 NA NA NA NA NA