Case/Control GWAS IGAC1

Basic Information

Summary
Accession IGAC1
Title 테스트 CC GWAS
Description DD와 YY에 대한 GWAS
Dataseet IGDS3
Created date 2019-03-06
Last updated 2019-03-06
Registrant Incogwas Admin
Status SUCCESS

Sample Information

Group information
Type Name No. of samples
Case YY 10 samples
Control DD 3 samples
Total 6 samples

Analysis Result (Top 500 Loci)

Case control gwas result
Minimum MAF 0.01


Download: manhattan plot | result

case control gwas result
CHR SNP BP A1 F_A F_U A2 CHISQ P OR
1 BF049 33,463,384 C NA 0.3 T 0.0 1.0 NA
13 IMF100 22,345,579 A NA 0.3 G 0.0 1.0 NA
13 IMF099 22,241,837 A NA 0.35 G 0.0 1.0 NA
13 IMF001 13,696,766 T NA 0.15 C 0.0 1.0 NA
12 IMF087 59,746,967 C NA 0.3 T 0.0 1.0 NA
12 IMF086 59,699,633 C NA 0.2 T 0.0 1.0 NA
12 IMF079 54,635,126 C NA 0.3 T 0.0 1.0 NA
12 IMF083 54,127,500 A NA 0.1 G 0.0 1.0 NA
12 IMF081 53,088,251 C NA 0.3 T 0.0 1.0 NA
12 IMF080 53,079,696 T NA 0.3 C 0.0 1.0 NA
12 IMF084 52,951,032 T NA 0.3 C 0.0 1.0 NA
12 IMF076 52,530,438 A NA 0.3 G 0.0 1.0 NA
12 IMF077 52,194,932 A NA 0.3 G 0.0 1.0 NA
12 IMF082 52,168,157 G NA 0.4 A 0.0 1.0 NA
12 IMF075 52,147,581 G NA 0.35 A 0.0 1.0 NA
11 IMF002 38,737,558 G NA 0.05 A 0.0 1.0 NA
11 BF005 36,776,437 T NA 0.2 G 0.0 1.0 NA
11 BF074 24,099,917 C NA 0.15 T 0.0 1.0 NA
13 IMF101 24,782,678 G NA 0.4 A 0.0 1.0 NA
13 IMF098 29,002,221 T NA 0.4 C 0.0 1.0 NA
13 BF001 52,425,932 C NA 0.15 T 0.0 1.0 NA
13 IMF103 54,647,789 A NA 0.35 G 0.0 1.0 NA
17 BF076 24,230,064 T NA 0.25 C 0.0 1.0 NA
17 BF065 23,610,691 T NA 0.35 C 0.0 1.0 NA
17 BF078 23,582,219 T NA 0.35 C 0.0 1.0 NA
17 BF066 6,013,877 C NA 0.6 T 0.0 1.0 NA
16 BF075 11,170,391 G NA 0.4 T 0.0 1.0 NA
16 BF051 8,726,614 T NA 0.05 G 0.0 1.0 NA
16 IMF004 1,079,059 C NA 0.3 T 0.0 1.0 NA
16 BF002 964,201 T NA 0.4 G 0.0 1.0 NA
11 BF010 1,739,862 A NA 0.15 C 0.0 1.0 NA
15 BF080 10,940,052 G NA 0.05 A 0.0 1.0 NA
14 BF007 132,583,785 A NA 0.15 G 0.0 1.0 NA
14 IMF011 109,816,290 G NA 0.55 A 0.0 1.0 NA
13 IMF114 137,562,773 G NA 0.35 A 0.0 1.0 NA
13 IMF113 132,498,791 A NA 0.1 G 0.0 1.0 NA
13 IMF108 107,633,682 A NA 0.1 G 0.0 1.0 NA
13 IMF107 103,339,848 A NA 0.2 G 0.0 1.0 NA
13 BF003 80,436,190 T NA 0.25 C 0.0 1.0 NA
13 BF009 58,793,452 G NA 0.2 A 0.0 1.0 NA
14 BF014 132,602,067 C NA 0.2 T 0.0 1.0 NA
9 BF070 23,794,494 T NA 0.35 C 0.0 1.0 NA
9 BF061 23,626,582 G NA 0.2 A 0.0 1.0 NA
9 BF064 23,512,060 G NA 0.35 A 0.0 1.0 NA
1 BF057 248,280,966 A NA 0.1 G 0.0 1.0 NA
1 BF054 239,175,798 C NA 0.6 T 0.0 1.0 NA
1 BF058 238,879,477 T NA 0.6 C 0.0 1.0 NA
1 BF079 106,272,325 G NA 0.2 A 0.0 1.0 NA
1 BF077 82,246,389 C NA 0.35 T 0.0 1.0 NA
1 BF042 76,435,569 T NA 0.15 C 0.0 1.0 NA
1 BF043 71,240,723 G NA 0.15 C 0.0 1.0 NA
1 BF053 70,405,415 C NA 0.45 A 0.0 1.0 NA
2 IMF005 20,052,368 G NA 0.05 A 0.0 1.0 NA
1 BF041 66,406,347 G NA 0.1 A 0.0 1.0 NA
1 BF071 59,802,697 G NA 0.2 A 0.0 1.0 NA
1 BF048 59,169,232 C NA 0.45 T 0.0 1.0 NA
1 BF073 58,984,446 G NA 0.3 A 0.0 1.0 NA
1 BF046 55,752,574 G NA 0.15 A 0.0 1.0 NA
1 BF059 55,734,388 T NA 0.2 C 0.0 1.0 NA
1 BF055 55,705,557 G NA 0.45 A 0.0 1.0 NA
1 BF047 54,824,085 C NA 0.2 T 0.0 1.0 NA
1 BF045 37,587,582 T NA 0.25 C 0.0 1.0 NA
1 BF050 64,039,056 A NA 0.35 C 0.0 1.0 NA
17 BF068 25,429,459 A NA 0.45 C 0.0 1.0 NA
3 BF012 23,131,775 T NA 0.1 C 0.0 1.0 NA
4 IMF012 14,754,906 G NA 0.3 A 0.0 1.0 NA
9 BF069 23,416,686 A NA 0.55 G 0.0 1.0 NA
9 BF063 23,163,791 C NA 0.15 A 0.0 1.0 NA
9 BF006 20,174,513 C NA 0.25 T 0.0 1.0 NA
9 BF052 19,142,170 T NA 0.45 C 0.0 1.0 NA
8 BF004 56,861,474 T NA 0.45 C 0.0 1.0 NA
7 IMF003 95,060,237 A NA 0.5 G 0.0 1.0 NA
6 BEL001 79,758,709 T NA 0.55 C 0.0 1.0 NA
6 BEL007 79,597,816 G NA 0.5 A 0.0 1.0 NA
3 BF013 30,641,913 A NA 0.3 G 0.0 1.0 NA
6 BEL003 78,170,250 T NA 0.4 C 0.0 1.0 NA
6 BEL005 77,161,505 C NA 0.15 T 0.0 1.0 NA
6 BEL002 76,312,649 C NA 0.4 T 0.0 1.0 NA
6 BEL006 74,481,275 T NA 0.35 G 0.0 1.0 NA
6 BEL008 66,630,790 C NA 0.4 A 0.0 1.0 NA
6 BEL010 61,602,482 C NA 0.2 A 0.0 1.0 NA
6 IMF008 38,246,734 G NA 0.15 A 0.0 1.0 NA
5 IMF010 74,713,169 T NA 0.4 C 0.0 1.0 NA
5 IMF013 68,542,388 A NA 0.45 G 0.0 1.0 NA
6 BEL004 78,146,249 T NA 0.45 C 0.0 1.0 NA
18 BF015 214,842 T NA 0.3 C 0.0 1.0 NA
1 BF044 39,496,775 T NA 0.0 C NA NA NA
1 IMF006 235,349,972 T NA 0.0 G NA NA NA
3 BF011 55,094,367 T NA 0.0 C NA NA NA
15 IMF007 13,321,028 T NA 0.0 C NA NA NA
15 BF062 36,743,539 T NA 0.0 C NA NA NA
15 BF008 87,052,613 A NA 0.0 G NA NA NA